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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDR48605.1Transporter, betaine/carnitine/choline family; KEGG: shn:Shewana3_2719 3.6e-95 choline/carnitine/betaine transporter K01718; COG: COG1292 Choline-glycine betaine transporter; Psort location: CytoplasmicMembrane, score: 10.00; Belongs to the BCCT transporter (TC 2.A.15) family. (498 aa)    
Predicted Functional Partners:
grdI
Betaine reductase complex component B subunit alpha; KEGG: tte:TTE1879 3.5e-90 GrdE proprotein; COG: NOG06476 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
 
     0.639
grdH
Betaine reductase complex component B subunit beta; KEGG: chy:CHY_2393 3.2e-80 grdB; glycine reductase, selenoprotein B; COG: NOG06475 non supervised orthologous group.
 
     0.567
EDR48606.1
KEGG: chy:CHY_2393 2.8e-19 grdB; glycine reductase, selenoprotein B; COG: NOG06475 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
       0.556
EDR48609.1
Hypothetical protein; KEGG: hpa:HPAG1_0925 0.00031 D-alanine glycine permease K01613; COG: COG3949 Uncharacterized membrane protein; Psort location: CytoplasmicMembrane, score: 9.99.
 
     0.410
EDR45564.1
Transcriptional regulator, TetR family; COG: COG1309 Transcriptional regulator; Psort location: Cytoplasmic, score: 8.87.
 
  
 0.402
Your Current Organism:
Dorea formicigenerans
NCBI taxonomy Id: 411461
Other names: D. formicigenerans ATCC 27755, Dorea formicigenerans ATCC 27755
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