Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
EDR48510.1Transcriptional regulator, LuxR family; Psort location: CytoplasmicMembrane, score: 9.75. (527 aa)    
Predicted Functional Partners:
EDR48509.1
ABC transporter, solute-binding protein; COG: COG1653 ABC-type sugar transport system, periplasmic component.
 
     0.932
EDR48511.1
Hypothetical protein.
       0.773
patB
Cystathionine beta-lyase PatB; KEGG: oih:OB2338 1.1e-70 aminotransferase K00842; COG: COG1168 Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities.
    
   0.755
EDR46623.1
Aminotransferase, class I/II; KEGG: ctc:CTC00825 5.6e-67 putative aspartate aminotransferase K00842; COG: COG1168 Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities; Psort location: Cytoplasmic, score: 8.87.
    
   0.755
EDR45853.1
Aminotransferase, class I/II; KEGG: cac:CAC2970 8.8e-101 patB; PLP-dependent aminotransferase, K00842; COG: COG1168 Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities; Psort location: Cytoplasmic, score: 8.87.
    
   0.755
EDR48507.1
Hypothetical protein; KEGG: afu:AF1515 7.7e-08 signal-transducing histidine kinase; COG: COG4564 Signal transduction histidine kinase; Psort location: CytoplasmicMembrane, score: 9.97.
 
     0.644
EDR48517.1
Hypothetical protein; COG: COG1512 Beta-propeller domains of methanol dehydrogenase type.
 
     0.609
EDR48506.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.97.
 
     0.602
vraR
Response regulator protein VraR; KEGG: fal:FRAAL4813 3.8e-20 putative two-component system response regulator; COG: COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; Psort location: Cytoplasmic, score: 9.98.
 
   
 0.587
EDR48515.1
Hypothetical protein; COG: COG4260 Putative virion core protein (lumpy skin disease virus); Psort location: Cytoplasmic, score: 8.87.
 
     0.549
Your Current Organism:
Dorea formicigenerans
NCBI taxonomy Id: 411461
Other names: D. formicigenerans ATCC 27755, Dorea formicigenerans ATCC 27755
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