Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
EDR48560.1Hypothetical protein; COG: COG3666 Transposase and inactivated derivatives. (91 aa)    
Predicted Functional Partners:
EDR48185.1
Hypothetical protein; COG: COG3666 Transposase and inactivated derivatives.
  
     0.730
EDR46107.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.99.
  
     0.468
EDR48559.1
COG: COG1305 Transglutaminase-like enzymes, putative cysteine proteases; Psort location: Cytoplasmic, score: 8.87.
       0.463
EDR46777.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
  
     0.449
EDR48558.1
Mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein; KEGG: bcz:BCZK2578 9.4e-65 ykfB; mandelate racemase/muconate lactonizing enzyme K01781; COG: COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily; Psort location: Cytoplasmic, score: 8.87.
       0.411
EDR46776.1
Hydantoinase/oxoprolinase; KEGG: nph:NP6218A 3.6e-29 hyuA_2; N-methylhydantoinase (ATP-hydrolyzing) A 2 K01473; COG: COG0145 N-methylhydantoinase A/acetone carboxylase, beta subunit; Psort location: Cytoplasmic, score: 8.87.
  
     0.405
Your Current Organism:
Dorea formicigenerans
NCBI taxonomy Id: 411461
Other names: D. formicigenerans ATCC 27755, Dorea formicigenerans ATCC 27755
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