Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EDR48472.1Hypothetical protein; KEGG: sth:STH773 5.9e-07 ribose ABC transporter ATP-binding protein K02056; COG: COG1879 ABC-type sugar transport system, periplasmic component. (46 aa)    
Predicted Functional Partners:
EDR48473.1
Hypothetical protein; KEGG: sth:STH773 1.3e-07 ribose ABC transporter ATP-binding protein K02056; COG: COG1879 ABC-type sugar transport system, periplasmic component; Psort location: Extracellular, score: 8.82.
 
     0.929
rbsK
Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.
 
  
 0.928
EDR48417.1
Hypothetical protein.
   
 
 0.821
EDR48301.1
Hypothetical protein; KEGG: tcx:Tcr_2180 1.1e-64 PAS/PAC sensor hybrid histidine kinase K07679; COG: COG0642 Signal transduction histidine kinase; Psort location: CytoplasmicMembrane, score: 10.00.
   
 
 0.796
EDR46822.1
Response regulator receiver domain protein; KEGG: chu:CHU_2895 4.1e-66 sensory box histidine kinase/response regulator; COG: COG2203 FOG: GAF domain; Psort location: Cytoplasmic, score: 9.36.
   
 
 0.796
EDR47543.1
Branched-chain amino acid ABC transporter, permease protein; KEGG: msm:MSMEG_4171 7.2e-58 ribose transport system permease protein RbsC; COG: COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components; Psort location: CytoplasmicMembrane, score: 10.00.
 
   0.738
EDR48474.1
Sugar-binding domain protein; KEGG: msm:MSMEG_3095 7.8e-05 D-ribose-binding periplasmic protein; COG: COG1609 Transcriptional regulators; Psort location: Cytoplasmic, score: 9.98.
 
    0.653
EDR47318.1
Branched-chain amino acid ABC transporter, permease protein; KEGG: msm:MSMEG_1710 6.4e-50 ribose transport system permease protein RbsC; COG: COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components; Psort location: CytoplasmicMembrane, score: 10.00.
 
   0.619
EDR47317.1
Branched-chain amino acid ABC transporter, permease protein; KEGG: msm:MSMEG_4171 3.8e-36 ribose transport system permease protein RbsC; COG: COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components; Psort location: CytoplasmicMembrane, score: 10.00.
 
   0.613
EDR47542.1
ABC transporter, ATP-binding protein; KEGG: tte:TTE0763 1.3e-122 mglA4; ABC-type sugar (aldose) transport system, ATPase component K02056; COG: COG1129 ABC-type sugar transport system, ATPase component; Psort location: CytoplasmicMembrane, score: 9.49.
 
   0.592
Your Current Organism:
Dorea formicigenerans
NCBI taxonomy Id: 411461
Other names: D. formicigenerans ATCC 27755, Dorea formicigenerans ATCC 27755
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