STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
EDR48505.1Hypothetical protein; COG: COG4336 Uncharacterized conserved protein; Psort location: Cytoplasmic, score: 8.87; Belongs to the D-glutamate cyclase family. (273 aa)    
Predicted Functional Partners:
EDR46550.1
Hypothetical protein; COG: COG1914 Mn2+ and Fe2+ transporters of the NRAMP family; Psort location: CytoplasmicMembrane, score: 9.99.
 
  
 0.933
EDR46549.1
TIGR00370 family protein; KEGG: eci:UTI89_C0709 3.5e-42 ybgJ; hypothetical protein YbgJ K01457; COG: COG2049 Allophanate hydrolase subunit 1; Psort location: Cytoplasmic, score: 8.87.
 
    0.835
EDR46548.1
Biotin-dependent carboxylase domain protein; KEGG: rso:RSc2170 3.9e-50 RS01429; hypothetical protein K01457; COG: COG1984 Allophanate hydrolase subunit 2; Psort location: Cytoplasmic, score: 8.87.
 
    0.804
pxpA
LamB/YcsF family protein; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate.
 
    0.703
EDR46340.1
Transcriptional regulator, IclR family, C-terminal domain protein; COG: COG1414 Transcriptional regulator; Psort location: Cytoplasmic, score: 8.87.
  
    0.565
hydE
Iron-only hydrogenase maturation rSAM protein HydE; KEGG: bth:BT1835 1.2e-103 biotin synthetase K01012; COG: COG0502 Biotin synthase and related enzymes; Psort location: Cytoplasmic, score: 8.87.
       0.497
Your Current Organism:
Dorea formicigenerans
NCBI taxonomy Id: 411461
Other names: D. formicigenerans ATCC 27755, Dorea formicigenerans ATCC 27755
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