Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDR48425.1Hypothetical protein; KEGG: cpe:CPE1882 0.0098 probable collagenase K08303; COG: COG3022 Uncharacterized protein conserved in bacteria; Psort location: Cytoplasmic, score: 8.87; Belongs to the UPF0246 family. (249 aa)    
Predicted Functional Partners:
EDR48424.1
Antioxidant, AhpC/TSA family; KEGG: btk:BT9727_0447 1.3e-35 bcp; bacterioferritin comigratory protein K03564; COG: COG1225 Peroxiredoxin.
 
    0.862
EDR48426.1
Transcriptional regulator, Fur family; COG: COG0735 Fe2+/Zn2+ uptake regulation proteins; Psort location: Cytoplasmic, score: 8.87; Belongs to the Fur family.
       0.495
Your Current Organism:
Dorea formicigenerans
NCBI taxonomy Id: 411461
Other names: D. formicigenerans ATCC 27755, Dorea formicigenerans ATCC 27755
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