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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDR48427.1Rubredoxin; KEGG: cpr:CPR_0938 4.1e-64 periplasmic [Fe] hydrogenase 1 K00532; COG: COG1592 Rubrerythrin. (180 aa)    
Predicted Functional Partners:
EDR48429.1
Putative superoxide reductase; KEGG: dvu:DVU3183 1.5e-25 rbo; desulfoferrodoxin K05919; COG: COG2033 Desulfoferrodoxin; Psort location: Cytoplasmic, score: 8.87.
 
  
 0.851
EDR48430.1
Rubredoxin; KEGG: sat:SYN_02123 3.8e-13 ferric-chelate reductase / rubredoxin K00521; COG: COG1773 Rubredoxin; Psort location: Cytoplasmic, score: 9.98; Belongs to the rubredoxin family.
 
  
 0.748
ldh
L-lactate dehydrogenase; Catalyzes the conversion of lactate to pyruvate. Belongs to the LDH/MDH superfamily. LDH family.
   
   0.715
EDR47706.1
Rubredoxin; KEGG: sat:SYN_02123 1.3e-44 ferric-chelate reductase / rubredoxin K00521; COG: COG1773 Rubredoxin.
 
  
 0.697
EDR48426.1
Transcriptional regulator, Fur family; COG: COG0735 Fe2+/Zn2+ uptake regulation proteins; Psort location: Cytoplasmic, score: 8.87; Belongs to the Fur family.
  
  
 0.658
EDR48424.1
Antioxidant, AhpC/TSA family; KEGG: btk:BT9727_0447 1.3e-35 bcp; bacterioferritin comigratory protein K03564; COG: COG1225 Peroxiredoxin.
     
 0.442
Your Current Organism:
Dorea formicigenerans
NCBI taxonomy Id: 411461
Other names: D. formicigenerans ATCC 27755, Dorea formicigenerans ATCC 27755
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