STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDR48429.1Putative superoxide reductase; KEGG: dvu:DVU3183 1.5e-25 rbo; desulfoferrodoxin K05919; COG: COG2033 Desulfoferrodoxin; Psort location: Cytoplasmic, score: 8.87. (130 aa)    
Predicted Functional Partners:
EDR48430.1
Rubredoxin; KEGG: sat:SYN_02123 3.8e-13 ferric-chelate reductase / rubredoxin K00521; COG: COG1773 Rubredoxin; Psort location: Cytoplasmic, score: 9.98; Belongs to the rubredoxin family.
 
  
 0.887
EDR48427.1
Rubredoxin; KEGG: cpr:CPR_0938 4.1e-64 periplasmic [Fe] hydrogenase 1 K00532; COG: COG1592 Rubrerythrin.
 
  
 0.851
ldh
L-lactate dehydrogenase; Catalyzes the conversion of lactate to pyruvate. Belongs to the LDH/MDH superfamily. LDH family.
     
 0.787
EDR47706.1
Rubredoxin; KEGG: sat:SYN_02123 1.3e-44 ferric-chelate reductase / rubredoxin K00521; COG: COG1773 Rubredoxin.
  
  
 0.683
EDR47310.1
Metallo-beta-lactamase domain protein; KEGG: eci:UTI89_C3072 1.4e-38 norV; anaerobic nitric oxide reductase flavorubredoxin; COG: COG0426 Uncharacterized flavoproteins; Psort location: Cytoplasmic, score: 8.87.
 
  
 0.680
EDR48426.1
Transcriptional regulator, Fur family; COG: COG0735 Fe2+/Zn2+ uptake regulation proteins; Psort location: Cytoplasmic, score: 8.87; Belongs to the Fur family.
     
 0.658
EDR47755.1
Flavodoxin; KEGG: syn:sll0219 3.9e-08 potential FMN-protein; COG: COG0716 Flavodoxins; Psort location: Cytoplasmic, score: 8.87.
  
  
 0.601
EDR46845.1
Rubrerythrin; KEGG: cpr:CPR_0938 1.9e-25 periplasmic [Fe] hydrogenase 1 K00532; COG: COG1592 Rubrerythrin; Psort location: Cytoplasmic, score: 8.87.
 
  
 0.541
baiA
Bile acid 7-dehydroxylase 1/3; KEGG: cpf:CPF_1154 2.4e-66 7-alpha-hydroxysteroid dehydrogenase K00076; COG: COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); Psort location: Cytoplasmic, score: 9.98.
 
     0.463
trxA
Thioredoxin; KEGG: mbo:Mb3945 4.1e-23 trxC; thioredoxin TrxC (TRX) (MPT46) K03671; COG: COG0526 Thiol-disulfide isomerase and thioredoxins; Psort location: Cytoplasmic, score: 9.65; Belongs to the thioredoxin family.
 
   
 0.424
Your Current Organism:
Dorea formicigenerans
NCBI taxonomy Id: 411461
Other names: D. formicigenerans ATCC 27755, Dorea formicigenerans ATCC 27755
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