STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDR48441.1CHAP domain protein; COG: COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains). (192 aa)    
Predicted Functional Partners:
EDR48440.1
Hypothetical protein; COG: COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains); Psort location: Cytoplasmic, score: 8.87.
     0.984
EDR48442.1
Penicillin-binding protein, transpeptidase domain protein; KEGG: saa:SAUSA300_0032 1.8e-102 mecA; penicillin-binding protein 2' K02545; COG: COG0768 Cell division protein FtsI/penicillin-binding protein 2; Psort location: CytoplasmicMembrane, score: 9.49.
 
     0.659
EDR48439.1
Toxin-antitoxin system, toxin component, MazF family; Toxic component of a type II toxin-antitoxin (TA) system.
       0.580
EDR46711.1
KEGG: ljo:LJ1840 0.0020 cell wall-associated serine proteinase K01361; COG: COG4932 Predicted outer membrane protein; Psort location: Cellwall, score: 9.25.
  
  
 0.550
EDR48443.1
Hypothetical protein; KEGG: chu:CHU_1842 0.00096 cel; candidate retaining b-glycosidase, glycoside hydrolase family 5 protein K01179; Psort location: Cytoplasmic, score: 8.87.
       0.493
EDR45377.1
Site-specific recombinase, phage integrase family; COG: COG0582 Integrase; Psort location: Cytoplasmic, score: 8.87; Belongs to the 'phage' integrase family.
  
     0.490
EDR48444.1
Hypothetical protein.
       0.489
EDR45376.1
Site-specific recombinase, phage integrase family; COG: COG0582 Integrase; Psort location: Cytoplasmic, score: 8.87; Belongs to the 'phage' integrase family.
  
     0.450
EDR48438.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.427
Your Current Organism:
Dorea formicigenerans
NCBI taxonomy Id: 411461
Other names: D. formicigenerans ATCC 27755, Dorea formicigenerans ATCC 27755
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