STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDR48342.1Hypothetical protein; COG: COG4974 Site-specific recombinase XerD; Psort location: Extracellular, score: 8.82. (39 aa)    
Predicted Functional Partners:
EDR45549.1
DNA binding domain, excisionase family; Psort location: Cytoplasmic, score: 8.87.
 
     0.775
EDR48163.1
Hypothetical protein.
  
     0.773
EDR48164.1
Transposase; COG: COG4974 Site-specific recombinase XerD; Psort location: Cytoplasmic, score: 8.87.
  
     0.773
EDR45552.1
DNA-binding helix-turn-helix protein; KEGG: mmo:MMOB3450 0.00033 dam; adenine-specific DNA methyltransferase K06223; COG: COG1974 SOS-response transcriptional repressors (RecA-mediated autopeptidases); Psort location: Cytoplasmic, score: 8.87.
  
     0.621
EDR45550.1
DNA-binding helix-turn-helix protein; COG: COG2946 Putative phage replication protein RstA; Psort location: Cytoplasmic, score: 8.87.
 
     0.565
EDR46874.1
Hypothetical protein; COG: NOG21981 non supervised orthologous group.
  
     0.515
EDR46145.1
Sigma-70, region 4; KEGG: btl:BALH_3229 3.7e-06 sigW; RNA polymerase sigma-70 factor, ECF subfamily K00960; COG: NOG16920 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
  
     0.487
EDR46875.1
KEGG: bcz:BCZK3297 0.00049 RNA polymerase ECF-type sigma factor K03088; COG: NOG16920 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
  
    0.451
EDR45408.1
KEGG: ana:all4338 2.2e-65 fus; translation elongation factor EF-G K02355; COG: COG0480 Translation elongation factors (GTPases); Psort location: Cytoplasmic, score: 9.98.
  
    0.448
EDR48343.1
Hypothetical protein; COG: COG4804 Uncharacterized conserved protein; Psort location: Cytoplasmic, score: 8.87.
       0.408
Your Current Organism:
Dorea formicigenerans
NCBI taxonomy Id: 411461
Other names: D. formicigenerans ATCC 27755, Dorea formicigenerans ATCC 27755
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.