STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDR48360.1KEGG: btk:BT9727_0893 3.7e-06 CAAX amino terminal protease family protein (Ste24 endopeptidase) K06013; COG: COG1266 Predicted metal-dependent membrane protease; Psort location: CytoplasmicMembrane, score: 9.99. (328 aa)    
Predicted Functional Partners:
murI
Glutamate racemase; Provides the (R)-glutamate required for cell wall biosynthesis.
       0.604
EDR48050.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
  
     0.581
EDR48362.1
TIGR00266 family protein; COG: COG2013 Uncharacterized conserved protein.
       0.563
EDR47483.1
Hypothetical protein; KEGG: tte:TTE1682 2.9e-05 baeS8; sensory transduction histidine kinases K07777; COG: COG1196 Chromosome segregation ATPases; Psort location: Cytoplasmic, score: 8.87.
  
     0.515
EDR47484.1
Hypothetical protein; COG: NOG21901 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
  
     0.479
EDR47866.1
Hypothetical protein; KEGG: pfa:PFD0950w 0.0017 ran binding protein 1 K03864; COG: NOG36013 non supervised orthologous group.
  
     0.465
EDR46364.1
SNARE-like domain protein; KEGG: rru:Rru_A0202 8.3e-06 phospholipase D/transphosphatidylase K01115; COG: COG0398 Uncharacterized conserved protein; Psort location: CytoplasmicMembrane, score: 9.99.
  
     0.461
EDR47485.1
Putative dGTPase; KEGG: cal:orf19.3100 1.3e-14 USO4; coiled-coil protein necessary for protein transport from ER to Golgi K01553; COG: COG4913 Uncharacterized protein conserved in bacteria; Psort location: Cytoplasmic, score: 8.87.
  
     0.432
EDR45820.1
Efflux ABC transporter, permease protein; COG: COG0577 ABC-type antimicrobial peptide transport system, permease component; Psort location: CytoplasmicMembrane, score: 9.26.
 
    0.417
EDR48273.1
Hypothetical protein; KEGG: eci:UTI89_C1627 1.5e-05 entS; EntS/YbdA MFS transporter; COG: NOG04032 non supervised orthologous group; Psort location: Cellwall, score: 9.98.
  
     0.413
Your Current Organism:
Dorea formicigenerans
NCBI taxonomy Id: 411461
Other names: D. formicigenerans ATCC 27755, Dorea formicigenerans ATCC 27755
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