STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDR48377.1Efflux ABC transporter, permease protein; KEGG: chu:CHU_0040 6.0e-09 ATPase involved in DNA repair K03546; COG: COG0577 ABC-type antimicrobial peptide transport system, permease component. (1115 aa)    
Predicted Functional Partners:
EDR48376.1
ABC transporter, ATP-binding protein; KEGG: fal:FRAAL2864 3.3e-46 putative transport protein of outer membrane lipoproteins (ABC superfamily, atp_bind) (partial match); COG: COG1136 ABC-type antimicrobial peptide transport system, ATPase component; Psort location: CytoplasmicMembrane, score: 9.49.
 
    0.938
scpA
ScpA/B protein; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves.
  
 
 0.749
EDR48375.1
Prevent-host-death family protein; Antitoxin component of a type II toxin-antitoxin (TA) system.
       0.732
EDR45655.1
Topoisomerase DNA-binding C4 zinc finger domain protein; KEGG: pab:PAB1430 5.2e-06 topA; DNA topoisomerase I K03168; COG: COG0514 Superfamily II DNA helicase; Psort location: Cytoplasmic, score: 8.87.
  
 
 0.535
EDR48241.1
Hypothetical protein; COG: NOG18757 non supervised orthologous group.
  
     0.507
EDR47906.1
DNA gyrase, B subunit, C-terminal domain protein; KEGG: bsu:BG10070 4.1e-174 gyrB, novA; DNA gyrase subunit B K02470; COG: COG0187 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit; Psort location: Cytoplasmic, score: 8.87.
   
   0.496
gyrB
DNA gyrase, B subunit; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner.
   
   0.496
EDR46331.1
Pilin isopeptide linkage domain protein; KEGG: mmr:Mmar10_2493 2.3e-07 serralysin K01406; COG: NOG22929 non supervised orthologous group; Psort location: Cellwall, score: 9.26.
 
 
   0.487
EDR48374.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.480
srtB-2
Sortase, SrtB family; COG: COG4509 Uncharacterized protein conserved in bacteria.
  
     0.463
Your Current Organism:
Dorea formicigenerans
NCBI taxonomy Id: 411461
Other names: D. formicigenerans ATCC 27755, Dorea formicigenerans ATCC 27755
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