STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ribEKEGG: cpf:CPF_0547 2.4e-59 ribE; riboflavin synthase, alpha subunit K00793; COG: COG0307 Riboflavin synthase alpha chain; Psort location: Cytoplasmic, score: 8.87. (221 aa)    
Predicted Functional Partners:
ribD
Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
  
 0.999
ribB
3,4-dihydroxy-2-butanone-4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
 
 0.999
ribH
6,7-dimethyl-8-ribityllumazine synthase; Catalyzes the formation of 6,7-dimethyl-8-ribityllumazine by condensation of 5-amino-6-(D-ribitylamino)uracil with 3,4-dihydroxy-2- butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin.
 
 0.999
EDR48380.1
Hypothetical protein.
       0.773
ribF
KEGG: chu:CHU_0947 3.3e-46 ribF; bifunctional protein: riboflavin kinase; FAD synthetase K00861:K00953; COG: COG0196 FAD synthase; Psort location: Cytoplasmic, score: 8.87.
    
 0.624
folK
2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase; Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin.
 
   
 0.491
EDR48379.1
MATE efflux family protein; COG: COG0534 Na+-driven multidrug efflux pump; Psort location: CytoplasmicMembrane, score: 9.99.
  
    0.441
EDR48385.1
Putative phage shock protein B; KEGG: cal:orf19.2859 6.8e-09 SRP40; nonribosomal protein of the nucleolus and coiled bodies K01186; COG: COG5295 Autotransporter adhesin; Psort location: Cellwall, score: 9.93.
       0.419
EDR48386.1
MBOAT family protein; KEGG: pen:PSEEN4543 8.9e-49 algI; alginate O-acetylation protein AlgI K00680; COG: COG1696 Predicted membrane protein involved in D-alanine export; Psort location: CytoplasmicMembrane, score: 9.99.
       0.419
Your Current Organism:
Dorea formicigenerans
NCBI taxonomy Id: 411461
Other names: D. formicigenerans ATCC 27755, Dorea formicigenerans ATCC 27755
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