Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
EDR48395.1Hypothetical protein; KEGG: lma:LmjF28.1160 0.00027 vacuolar type H+ ATPase subunit, putative K02155; COG: COG2391 Predicted transporter component; Psort location: CytoplasmicMembrane, score: 9.99. (366 aa)    
Predicted Functional Partners:
EDR48396.1
Hypothetical protein; COG: NOG13230 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87; Belongs to the sulfur carrier protein TusA family.
 
  
 0.940
EDR48394.1
Hypothetical protein.
       0.538
yedF
Selenium metabolism protein YedF; COG: NOG13230 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87; Belongs to the sulfur carrier protein TusA family.
 
  
 0.527
selB
KEGG: sfu:Sfum_1220 2.0e-117 selenocysteine-specific translation elongation factor K00955; COG: COG3276 Selenocysteine-specific translation elongation factor; Psort location: Cytoplasmic, score: 9.98.
 
   
 0.471
EDR47446.1
Hypothetical protein; KEGG: mtu:Rv1992c 0.00055 ctpG; probable cation-transporting ATPase G; COG: COG4087 Soluble P-type ATPase; Psort location: Cytoplasmic, score: 8.87.
  
     0.414
argG
KEGG: lma:LmjF23.0260 3.0e-132 argininosuccinate synthase, putative K01940; COG: COG0137 Argininosuccinate synthase; Psort location: Cytoplasmic, score: 8.87; Belongs to the argininosuccinate synthase family. Type 1 subfamily.
       0.406
Your Current Organism:
Dorea formicigenerans
NCBI taxonomy Id: 411461
Other names: D. formicigenerans ATCC 27755, Dorea formicigenerans ATCC 27755
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