Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EDR48404.1Mandelate racemase/muconate lactonizing enzyme, N-terminal domain protein; KEGG: zmo:ZMO1264 6.3e-107 rspA; putative mandelate racemase K01781; COG: COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily; Psort location: Cytoplasmic, score: 8.87; Belongs to the mandelate racemase/muconate lactonizing enzyme family. (393 aa)    
Predicted Functional Partners:
EDR47439.1
Macro domain protein; KEGG: reh:H16_A1552 1.2e-25 predicted phosphatase homolog to the C-terminal domain of histone macroH2A1; COG: COG2110 Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1; Psort location: Cytoplasmic, score: 8.87.
   
   0.697
EDR48403.1
KEGG: rha:RHA1_ro08170 2.6e-09 ABC transporter, permease component; COG: COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component; Psort location: CytoplasmicMembrane, score: 9.99.
       0.686
EDR48405.1
Hypothetical protein; COG: COG2508 Regulator of polyketide synthase expression; Psort location: CytoplasmicMembrane, score: 7.80.
       0.535
EDR48406.1
2-hydroxyglutaryl-CoA dehydratase, D-component; KEGG: eci:UTI89_C5045 8.9e-108 yjiM; hypothetical protein YjiM K04111; COG: COG1775 Benzoyl-CoA reductase/2-hydroxyglutaryl-CoA dehydratase subunit, BcrC/BadD/HgdB; Psort location: Cytoplasmic, score: 8.87.
       0.535
EDR48402.1
Hypothetical protein; KEGG: aci:ACIAD1512 0.0066 putative dibenzothiophene desulfurization enzyme B K05977; COG: COG0715 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components.
       0.487
Your Current Organism:
Dorea formicigenerans
NCBI taxonomy Id: 411461
Other names: D. formicigenerans ATCC 27755, Dorea formicigenerans ATCC 27755
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