STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDR48413.1Basic membrane protein; COG: COG1744 Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein; Psort location: Cytoplasmic, score: 8.87. (641 aa)    
Predicted Functional Partners:
EDR48414.1
Ser/Thr phosphatase family protein; KEGG: mst:Msp_1010 2.2e-08 predicted phosphoesterase; COG: NOG32807 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
 
     0.949
EDR47290.1
ABC transporter, ATP-binding protein; KEGG: tte:TTE0458 1.2e-114 mglA3; ABC-type sugar (aldose) transport system, ATPase component K02056; COG: COG3845 ABC-type uncharacterized transport systems, ATPase components; Psort location: CytoplasmicMembrane, score: 9.49.
 
  
 0.721
radA
DNA repair protein RadA; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function.
       0.661
EDR47288.1
Branched-chain amino acid ABC transporter, permease protein; COG: COG1079 Uncharacterized ABC-type transport system, permease component; Psort location: CytoplasmicMembrane, score: 9.99.
 
  
 0.582
EDR47289.1
KEGG: aha:AHA_1905 4.4e-06 L-arabinose ABC transporter, permease protein; COG: COG4603 ABC-type uncharacterized transport system, permease component; Psort location: CytoplasmicMembrane, score: 9.99.
 
  
 0.497
EDR48411.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.422
Your Current Organism:
Dorea formicigenerans
NCBI taxonomy Id: 411461
Other names: D. formicigenerans ATCC 27755, Dorea formicigenerans ATCC 27755
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