STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDR48241.1Hypothetical protein; COG: NOG18757 non supervised orthologous group. (134 aa)    
Predicted Functional Partners:
EDR48240.1
Hypothetical protein; COG: NOG23778 non supervised orthologous group.
 
     0.875
EDR48239.1
DnaJ domain protein; KEGG: cal:orf19.5614 0.0040 RNH2; ribonuclease H K03469; COG: COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain; Psort location: Cytoplasmic, score: 9.98.
 
     0.844
srtB
Sortase, SrtB family; COG: COG4509 Uncharacterized protein conserved in bacteria.
 
     0.658
EDR48377.1
Efflux ABC transporter, permease protein; KEGG: chu:CHU_0040 6.0e-09 ATPase involved in DNA repair K03546; COG: COG0577 ABC-type antimicrobial peptide transport system, permease component.
  
     0.507
EDR48243.1
COG: COG4481 Uncharacterized protein conserved in bacteria; Psort location: Cytoplasmic, score: 8.87.
       0.484
rpsF
Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.
       0.484
EDR48245.1
KEGG: shn:Shewana3_3590 1.1e-18 single-strand binding protein K00655; COG: COG0629 Single-stranded DNA-binding protein; Psort location: Cytoplasmic, score: 8.87.
       0.447
Your Current Organism:
Dorea formicigenerans
NCBI taxonomy Id: 411461
Other names: D. formicigenerans ATCC 27755, Dorea formicigenerans ATCC 27755
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.