EDR48286.1 protein (Dorea formicigenerans) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

EDR48286.1

Hypothetical protein; COG: COG0428 Predicted divalent heavy-metal cations transporter. (89 aa)

Predicted Functional Partners:

EDR48288.1

0.534

EDR48287.1

0.527

EDR48289.1

0.526

EDR48290.1

0.476

Your Current Organism:

Dorea formicigenerans

NCBI taxonomy Id: 411461
Other names: D. formicigenerans ATCC 27755, Dorea formicigenerans ATCC 27755

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EDR48286.1	EDR48287.1	DORFOR_00411	DORFOR_00412	Hypothetical protein; COG: COG0428 Predicted divalent heavy-metal cations transporter.	Lipase/acylhydrolase, GDSL family; KEGG: fra:Francci3_1861 4.7e-09 2-dehydropantoate 2-reductase K00077; COG: COG1893 Ketopantoate reductase.	0.527
EDR48286.1	EDR48288.1	DORFOR_00411	DORFOR_00413	Hypothetical protein; COG: COG0428 Predicted divalent heavy-metal cations transporter.	Hypothetical protein; KEGG: sru:SRU_1592 4.5e-17 menaquinone biosynthesis methyltransferase UbiE K00599; COG: COG0500 SAM-dependent methyltransferases; Psort location: Cytoplasmic, score: 8.87.	0.534
EDR48286.1	EDR48289.1	DORFOR_00411	DORFOR_00414	Hypothetical protein; COG: COG0428 Predicted divalent heavy-metal cations transporter.	Hypothetical protein; COG: NOG21754 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.	0.526
EDR48286.1	EDR48290.1	DORFOR_00411	DORFOR_00415	Hypothetical protein; COG: COG0428 Predicted divalent heavy-metal cations transporter.	Hypothetical protein; KEGG: mbo:Mb0533 1.5e-05 possible methyltransferase/methylase (fragment) K00599; COG: COG2226 Methylase involved in ubiquinone/menaquinone biosynthesis.	0.476
EDR48287.1	EDR48286.1	DORFOR_00412	DORFOR_00411	Lipase/acylhydrolase, GDSL family; KEGG: fra:Francci3_1861 4.7e-09 2-dehydropantoate 2-reductase K00077; COG: COG1893 Ketopantoate reductase.	Hypothetical protein; COG: COG0428 Predicted divalent heavy-metal cations transporter.	0.527
EDR48287.1	EDR48288.1	DORFOR_00412	DORFOR_00413	Lipase/acylhydrolase, GDSL family; KEGG: fra:Francci3_1861 4.7e-09 2-dehydropantoate 2-reductase K00077; COG: COG1893 Ketopantoate reductase.	Hypothetical protein; KEGG: sru:SRU_1592 4.5e-17 menaquinone biosynthesis methyltransferase UbiE K00599; COG: COG0500 SAM-dependent methyltransferases; Psort location: Cytoplasmic, score: 8.87.	0.813
EDR48287.1	EDR48289.1	DORFOR_00412	DORFOR_00414	Lipase/acylhydrolase, GDSL family; KEGG: fra:Francci3_1861 4.7e-09 2-dehydropantoate 2-reductase K00077; COG: COG1893 Ketopantoate reductase.	Hypothetical protein; COG: NOG21754 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.	0.803
EDR48287.1	EDR48290.1	DORFOR_00412	DORFOR_00415	Lipase/acylhydrolase, GDSL family; KEGG: fra:Francci3_1861 4.7e-09 2-dehydropantoate 2-reductase K00077; COG: COG1893 Ketopantoate reductase.	Hypothetical protein; KEGG: mbo:Mb0533 1.5e-05 possible methyltransferase/methylase (fragment) K00599; COG: COG2226 Methylase involved in ubiquinone/menaquinone biosynthesis.	0.716
EDR48288.1	EDR48286.1	DORFOR_00413	DORFOR_00411	Hypothetical protein; KEGG: sru:SRU_1592 4.5e-17 menaquinone biosynthesis methyltransferase UbiE K00599; COG: COG0500 SAM-dependent methyltransferases; Psort location: Cytoplasmic, score: 8.87.	Hypothetical protein; COG: COG0428 Predicted divalent heavy-metal cations transporter.	0.534
EDR48288.1	EDR48287.1	DORFOR_00413	DORFOR_00412	Hypothetical protein; KEGG: sru:SRU_1592 4.5e-17 menaquinone biosynthesis methyltransferase UbiE K00599; COG: COG0500 SAM-dependent methyltransferases; Psort location: Cytoplasmic, score: 8.87.	Lipase/acylhydrolase, GDSL family; KEGG: fra:Francci3_1861 4.7e-09 2-dehydropantoate 2-reductase K00077; COG: COG1893 Ketopantoate reductase.	0.813
EDR48288.1	EDR48289.1	DORFOR_00413	DORFOR_00414	Hypothetical protein; KEGG: sru:SRU_1592 4.5e-17 menaquinone biosynthesis methyltransferase UbiE K00599; COG: COG0500 SAM-dependent methyltransferases; Psort location: Cytoplasmic, score: 8.87.	Hypothetical protein; COG: NOG21754 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.	0.871
EDR48288.1	EDR48290.1	DORFOR_00413	DORFOR_00415	Hypothetical protein; KEGG: sru:SRU_1592 4.5e-17 menaquinone biosynthesis methyltransferase UbiE K00599; COG: COG0500 SAM-dependent methyltransferases; Psort location: Cytoplasmic, score: 8.87.	Hypothetical protein; KEGG: mbo:Mb0533 1.5e-05 possible methyltransferase/methylase (fragment) K00599; COG: COG2226 Methylase involved in ubiquinone/menaquinone biosynthesis.	0.678
EDR48289.1	EDR48286.1	DORFOR_00414	DORFOR_00411	Hypothetical protein; COG: NOG21754 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.	Hypothetical protein; COG: COG0428 Predicted divalent heavy-metal cations transporter.	0.526
EDR48289.1	EDR48287.1	DORFOR_00414	DORFOR_00412	Hypothetical protein; COG: NOG21754 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.	Lipase/acylhydrolase, GDSL family; KEGG: fra:Francci3_1861 4.7e-09 2-dehydropantoate 2-reductase K00077; COG: COG1893 Ketopantoate reductase.	0.803
EDR48289.1	EDR48288.1	DORFOR_00414	DORFOR_00413	Hypothetical protein; COG: NOG21754 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.	Hypothetical protein; KEGG: sru:SRU_1592 4.5e-17 menaquinone biosynthesis methyltransferase UbiE K00599; COG: COG0500 SAM-dependent methyltransferases; Psort location: Cytoplasmic, score: 8.87.	0.871
EDR48289.1	EDR48290.1	DORFOR_00414	DORFOR_00415	Hypothetical protein; COG: NOG21754 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.	Hypothetical protein; KEGG: mbo:Mb0533 1.5e-05 possible methyltransferase/methylase (fragment) K00599; COG: COG2226 Methylase involved in ubiquinone/menaquinone biosynthesis.	0.680
EDR48290.1	EDR48286.1	DORFOR_00415	DORFOR_00411	Hypothetical protein; KEGG: mbo:Mb0533 1.5e-05 possible methyltransferase/methylase (fragment) K00599; COG: COG2226 Methylase involved in ubiquinone/menaquinone biosynthesis.	Hypothetical protein; COG: COG0428 Predicted divalent heavy-metal cations transporter.	0.476
EDR48290.1	EDR48287.1	DORFOR_00415	DORFOR_00412	Hypothetical protein; KEGG: mbo:Mb0533 1.5e-05 possible methyltransferase/methylase (fragment) K00599; COG: COG2226 Methylase involved in ubiquinone/menaquinone biosynthesis.	Lipase/acylhydrolase, GDSL family; KEGG: fra:Francci3_1861 4.7e-09 2-dehydropantoate 2-reductase K00077; COG: COG1893 Ketopantoate reductase.	0.716
EDR48290.1	EDR48288.1	DORFOR_00415	DORFOR_00413	Hypothetical protein; KEGG: mbo:Mb0533 1.5e-05 possible methyltransferase/methylase (fragment) K00599; COG: COG2226 Methylase involved in ubiquinone/menaquinone biosynthesis.	Hypothetical protein; KEGG: sru:SRU_1592 4.5e-17 menaquinone biosynthesis methyltransferase UbiE K00599; COG: COG0500 SAM-dependent methyltransferases; Psort location: Cytoplasmic, score: 8.87.	0.678
EDR48290.1	EDR48289.1	DORFOR_00415	DORFOR_00414	Hypothetical protein; KEGG: mbo:Mb0533 1.5e-05 possible methyltransferase/methylase (fragment) K00599; COG: COG2226 Methylase involved in ubiquinone/menaquinone biosynthesis.	Hypothetical protein; COG: NOG21754 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.	0.680