STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDR48288.1Hypothetical protein; KEGG: sru:SRU_1592 4.5e-17 menaquinone biosynthesis methyltransferase UbiE K00599; COG: COG0500 SAM-dependent methyltransferases; Psort location: Cytoplasmic, score: 8.87. (235 aa)    
Predicted Functional Partners:
EDR48289.1
Hypothetical protein; COG: NOG21754 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
 
     0.871
EDR48287.1
Lipase/acylhydrolase, GDSL family; KEGG: fra:Francci3_1861 4.7e-09 2-dehydropantoate 2-reductase K00077; COG: COG1893 Ketopantoate reductase.
 
     0.813
EDR48532.1
Polyprenyl synthetase; KEGG: cpf:CPF_2074 7.0e-60 ispA; geranyltranstransferase K00795; COG: COG0142 Geranylgeranyl pyrophosphate synthase; Psort location: Cytoplasmic, score: 9.98; Belongs to the FPP/GGPP synthase family.
  
 
 0.737
EDR48290.1
Hypothetical protein; KEGG: mbo:Mb0533 1.5e-05 possible methyltransferase/methylase (fragment) K00599; COG: COG2226 Methylase involved in ubiquinone/menaquinone biosynthesis.
       0.678
EDR48286.1
Hypothetical protein; COG: COG0428 Predicted divalent heavy-metal cations transporter.
       0.534
EDR45597.1
O-methyltransferase domain protein; KEGG: fnu:FN0388 3.0e-36 tetracenomycin polyketide synthesis O-methyltransferase TcmP K00599; COG: COG3315 O-Methyltransferase involved in polyketide biosynthesis.
 
   
 0.463
birA
biotin--[acetyl-CoA-carboxylase] ligase; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.
     
 0.425
Your Current Organism:
Dorea formicigenerans
NCBI taxonomy Id: 411461
Other names: D. formicigenerans ATCC 27755, Dorea formicigenerans ATCC 27755
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