STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDR48297.1Hypothetical protein; KEGG: cal:orf19.575 4.1e-12 HYR5; similar to HYR1 K01186; COG: KOG1075 FOG: Reverse transcriptase; Psort location: Cellwall, score: 9.01. (987 aa)    
Predicted Functional Partners:
EDR46970.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
  
     0.745
EDR47337.1
Von Willebrand factor type A domain protein; KEGG: cal:orf19.1648 0.00031 RAD50; DNA repair protein K01553; COG: COG2304 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain.
 
   
 0.665
EDR46696.1
Hypothetical protein; COG: COG1277 ABC-type transport system involved in multi-copper enzyme maturation, permease component; Psort location: CytoplasmicMembrane, score: 9.99.
  
     0.621
EDR46796.1
Exonuclease; KEGG: psp:PSPPH_1792 4.5e-09 exonuclease; COG: COG5018 Inhibitor of the KinA pathway to sporulation, predicted exonuclease; Psort location: Cytoplasmic, score: 8.87.
 
     0.552
EDR46041.1
MobA/MobL family protein; KEGG: ret:RHE_PA00159 1.6e-16 traAa; conjugal transfer protein A K01144; COG: COG0507 ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member; Psort location: Cytoplasmic, score: 8.87.
  
    0.530
EDR46686.1
Transcriptional regulator, AbrB family; COG: COG2002 Regulators of stationary/sporulation gene expression; Psort location: Cytoplasmic, score: 8.87.
  
     0.519
EDR46101.1
Putative toxin-antitoxin system, toxin component; COG: COG2856 Predicted Zn peptidase; Psort location: Cytoplasmic, score: 8.87.
  
     0.501
EDR46688.1
KEGG: nmu:Nmul_A1253 1.2e-05 von Willebrand factor, type A K02448; COG: COG4548 Nitric oxide reductase activation protein; Psort location: Cytoplasmic, score: 8.87.
  
     0.499
EDR45729.1
CobW/P47K family protein; KEGG: reh:H16_A3373 3.9e-10 putative GTPase (G3E family); Psort location: Cytoplasmic, score: 8.87.
  
   0.490
EDR45904.1
Peptidase, S41 family; KEGG: cac:CAC0499 1.1e-68 carboxyl-terminal protease K03797; COG: COG0793 Periplasmic protease; Belongs to the peptidase S41A family.
  
   0.490
Your Current Organism:
Dorea formicigenerans
NCBI taxonomy Id: 411461
Other names: D. formicigenerans ATCC 27755, Dorea formicigenerans ATCC 27755
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