STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDR48124.1Hypothetical protein; KEGG: lsa:LSA1519 1.2e-96 putative teichoic acid/polysaccharide glycosyl transferase, family 2 K00754; COG: COG0463 Glycosyltransferases involved in cell wall biogenesis; Psort location: Cytoplasmic, score: 8.87. (353 aa)    
Predicted Functional Partners:
EDR48125.1
COG: COG4485 Predicted membrane protein; Psort location: CytoplasmicMembrane, score: 9.99.
 
  
 0.882
EDR47852.1
KEGG: tcx:Tcr_1675 1.1e-72 undecaprenyl-phosphate galactosephosphotransferase K03606; COG: COG2148 Sugar transferases involved in lipopolysaccharide synthesis; Psort location: CytoplasmicMembrane, score: 10.00.
 
  
 0.517
EDR48123.1
Hypothetical protein; KEGG: ava:Ava_1878 2.2e-33 two component transcriptional regulator, winged helix family K07659; COG: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; Psort location: Cytoplasmic, score: 9.65.
       0.509
EDR48126.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.507
EDR48122.1
Hypothetical protein; KEGG: ctc:CTC01905 2.2e-31 sensory transduction protein kinase; COG: COG2205 Osmosensitive K+ channel histidine kinase; Psort location: CytoplasmicMembrane, score: 7.73.
     
 0.485
EDR47877.1
Glycosyltransferase, group 2 family protein; KEGG: sph:MGAS10270_Spy0665 3.4e-76 glycosyltransferase involved in cell wall biogenesis; COG: COG0463 Glycosyltransferases involved in cell wall biogenesis; Psort location: Cytoplasmic, score: 8.87.
  
     0.410
Your Current Organism:
Dorea formicigenerans
NCBI taxonomy Id: 411461
Other names: D. formicigenerans ATCC 27755, Dorea formicigenerans ATCC 27755
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.