STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDR48134.1Isoaspartyl dipeptidase; Catalyzes the hydrolytic cleavage of a subset of L- isoaspartyl (L-beta-aspartyl) dipeptides. Used to degrade proteins damaged by L-isoaspartyl residues formation. Belongs to the peptidase M38 family. (383 aa)    
Predicted Functional Partners:
EDR48133.1
COG: COG1288 Predicted membrane protein; Psort location: CytoplasmicMembrane, score: 9.99.
 
     0.870
EDR48135.1
KEGG: shn:Shewana3_3435 3.2e-23 transcriptional regulator, LysR family K06022; COG: COG0583 Transcriptional regulator; Psort location: Cytoplasmic, score: 9.98; Belongs to the LysR transcriptional regulatory family.
       0.538
EDR46254.1
C4-dicarboxylate anaerobic carrier; KEGG: lwe:lwe0030 0.0039 PTS system, beta-glucoside-specific, IIABC component K00890; COG: COG1288 Predicted membrane protein; Psort location: CytoplasmicMembrane, score: 9.99.
 
     0.490
EDR48132.1
Hypothetical protein.
       0.480
EDR46813.1
UbiC transcription regulator-associated domain protein; KEGG: reh:H16_A3019 3.4e-11 hutC; histidine utilization repressor; COG: COG2188 Transcriptional regulators; Psort location: Cytoplasmic, score: 8.87.
  
 
 0.448
EDR45445.1
Hypothetical protein.
  
 
 0.448
EDR45621.1
Formiminotransferase-cyclodeaminase; KEGG: chy:CHY_1879 6.0e-47 fchA2; methenyltetrahydrofolate cyclohydrolase K01491; COG: COG3404 Methenyl tetrahydrofolate cyclohydrolase; Psort location: Cytoplasmic, score: 8.87.
  
 
  0.400
Your Current Organism:
Dorea formicigenerans
NCBI taxonomy Id: 411461
Other names: D. formicigenerans ATCC 27755, Dorea formicigenerans ATCC 27755
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.