STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDR48136.1Flavodoxin; KEGG: hso:HS_1210 0.00053 fldA; flavodoxin K03839; COG: COG0716 Flavodoxins. (156 aa)    
Predicted Functional Partners:
EDR48137.1
Hypothetical protein; KEGG: lsa:LSA1190 1.7e-24 putative 4-carboxymuconolactone decarboxylase K01607; COG: COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain; Psort location: Cytoplasmic, score: 8.87.
 
     0.927
EDR47244.1
Oxidoreductase, aldo/keto reductase family protein; KEGG: lsl:LSL_0710 1.4e-68 oxidoreductase K00100; COG: COG0656 Aldo/keto reductases, related to diketogulonate reductase; Psort location: Cytoplasmic, score: 8.87.
     0.871
EDR48135.1
KEGG: shn:Shewana3_3435 3.2e-23 transcriptional regulator, LysR family K06022; COG: COG0583 Transcriptional regulator; Psort location: Cytoplasmic, score: 9.98; Belongs to the LysR transcriptional regulatory family.
 
    0.718
EDR48138.1
Hypothetical protein; KEGG: mge:MG_010 3.1e-05 DNA primase K02316.
       0.403
EDR48139.1
Hypothetical protein.
       0.403
EDR48140.1
Hypothetical protein; KEGG: bca:BCE_0840 6.5e-16 type I restriction-modification system, R subunit K01153; COG: COG4096 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases; Psort location: Cytoplasmic, score: 8.87.
       0.403
Your Current Organism:
Dorea formicigenerans
NCBI taxonomy Id: 411461
Other names: D. formicigenerans ATCC 27755, Dorea formicigenerans ATCC 27755
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