STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDR48142.1Hypothetical protein; KEGG: tth:TTC1951 5.5e-09 recG; ATP-dependent DNA helicase RecG-related protein K01529; COG: COG2865 Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen. (128 aa)    
Predicted Functional Partners:
EDR48147.1
Hypothetical protein; KEGG: cgl:NCgl0024 3.8e-16 cgl0025; predicted transcriptional regulator K01529; COG: COG2865 Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen; Psort location: Cytoplasmic, score: 8.87.
  
 
 
0.816
EDR46394.1
Hypothetical protein; KEGG: fnu:FN0191 3.2e-64 ATP-dependent DNA helicase RecG K01529; COG: COG2865 Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen; Psort location: Cytoplasmic, score: 8.87.
  
  
  0.595
EDR48141.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.503
EDR46033.1
Hypothetical protein; COG: COG1373 Predicted ATPase (AAA+ superfamily); Psort location: Cytoplasmic, score: 8.87.
  
     0.492
EDR46756.1
Hypothetical protein; KEGG: mma:MM0198 4.7e-25 ATP-dependent DNA helicase K01529; COG: COG2865 Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen; Psort location: Cytoplasmic, score: 8.87.
  
 
 
0.449
EDR48143.1
Hypothetical protein; COG: NOG18412 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
       0.448
Your Current Organism:
Dorea formicigenerans
NCBI taxonomy Id: 411461
Other names: D. formicigenerans ATCC 27755, Dorea formicigenerans ATCC 27755
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.