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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDR48145.1Hypothetical protein; KEGG: noc:Noc_2789 0.0010 phosphatase KdsC K03270; Psort location: CytoplasmicMembrane, score: 7.80. (319 aa)    
Predicted Functional Partners:
EDR48146.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
 
     0.947
EDR48232.1
CotH protein; COG: COG5337 Spore coat assembly protein.
  
     0.572
EDR47875.1
COG: COG4713 Predicted membrane protein; Psort location: CytoplasmicMembrane, score: 9.99.
  
     0.569
EDR47857.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
  
     0.516
EDR48229.1
COG: COG4878 Uncharacterized protein conserved in bacteria.
  
     0.443
EDR48227.1
Hypothetical protein; KEGG: lil:LA0051 0.0019 dTDPglucose 4,6-dehydratase K01710; COG: COG0451 Nucleoside-diphosphate-sugar epimerases; Psort location: Cytoplasmic, score: 8.87.
  
     0.419
Your Current Organism:
Dorea formicigenerans
NCBI taxonomy Id: 411461
Other names: D. formicigenerans ATCC 27755, Dorea formicigenerans ATCC 27755
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