STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDR48165.1Transposase; COG: COG4974 Site-specific recombinase XerD; Psort location: Cytoplasmic, score: 8.87; Belongs to the 'phage' integrase family. (287 aa)    
Predicted Functional Partners:
EDR48164.1
Transposase; COG: COG4974 Site-specific recombinase XerD; Psort location: Cytoplasmic, score: 8.87.
     0.978
EDR48163.1
Hypothetical protein.
 
     0.864
EDR45549.1
DNA binding domain, excisionase family; Psort location: Cytoplasmic, score: 8.87.
 
     0.768
EDR48160.1
Hypothetical protein; COG: NOG34358 non supervised orthologous group.
       0.487
EDR48161.1
Hypothetical protein; KEGG: spi:MGAS10750_Spy1680 6.0e-15 replicative DNA helicase K01529; COG: COG1484 DNA replication protein; Psort location: Cytoplasmic, score: 8.87.
       0.487
EDR48162.1
Hypothetical protein; KEGG: spi:MGAS10750_Spy1680 2.0e-14 replicative DNA helicase K01529; COG: COG1484 DNA replication protein; Psort location: Cytoplasmic, score: 8.87.
       0.487
EDR48166.1
KEGG: bha:BH2238 1.4e-24 protein-tyrosine-phosphatase K01104; COG: COG0394 Protein-tyrosine-phosphatase; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.
       0.431
EDR48172.1
Hypothetical protein; COG: COG0582 Integrase; Belongs to the 'phage' integrase family.
  
     0.425
EDR46462.1
Hypothetical protein; COG: NOG21981 non supervised orthologous group.
  
     0.401
Your Current Organism:
Dorea formicigenerans
NCBI taxonomy Id: 411461
Other names: D. formicigenerans ATCC 27755, Dorea formicigenerans ATCC 27755
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