STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDR48177.1Hypothetical protein; Psort location: Cytoplasmic, score: 8.87. (71 aa)    
Predicted Functional Partners:
EDR48176.1
Hypothetical protein.
       0.543
EDR46519.1
DNA-binding helix-turn-helix protein; KEGG: blo:BL0712 1.1e-05 aspartate aminotransferase K00812; COG: COG1396 Predicted transcriptional regulators; Psort location: Cytoplasmic, score: 8.87.
  
     0.523
EDR45661.1
DNA-binding helix-turn-helix protein; KEGG: blo:BL0712 5.4e-06 aspartate aminotransferase K00812; COG: COG1396 Predicted transcriptional regulators; Psort location: Cytoplasmic, score: 8.87.
  
     0.521
EDR48178.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.499
EDR48179.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.26.
 
     0.482
EDR46036.1
Hypothetical protein; COG: COG1277 ABC-type transport system involved in multi-copper enzyme maturation, permease component; Psort location: CytoplasmicMembrane, score: 9.99.
  
     0.408
Your Current Organism:
Dorea formicigenerans
NCBI taxonomy Id: 411461
Other names: D. formicigenerans ATCC 27755, Dorea formicigenerans ATCC 27755
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.