STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDR48203.1Hypothetical protein; KEGG: mpe:MYPE6470 5.2e-08 parC; DNA topoisomerase IV subunit A K02621; COG: COG0188 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit. (466 aa)    
Predicted Functional Partners:
EDR48201.1
Hypothetical protein; KEGG: tvo:TVN0733 0.0065 putative cytochrome bd-I oxidase subunit II K00426; COG: COG1277 ABC-type transport system involved in multi-copper enzyme maturation, permease component; Psort location: CytoplasmicMembrane, score: 9.99.
 
     0.957
EDR48202.1
Hypothetical protein; COG: COG3225 ABC-type uncharacterized transport system involved in gliding motility, auxiliary component.
 
     0.957
EDR48200.1
KEGG: noc:Noc_2142 4.4e-51 ABC transporter, ATPase subunit; COG: COG1131 ABC-type multidrug transport system, ATPase component; Psort location: CytoplasmicMembrane, score: 9.49.
 
     0.918
EDR48205.1
KEGG: spd:SPD_1200 3.7e-31 glycosyl transferase, group 1 family protein K00754; COG: COG0438 Glycosyltransferase.
 
     0.505
EDR48199.1
Response regulator receiver domain protein; KEGG: eci:UTI89_C0420 1.3e-28 phoB; positive response regulator for pho regulon K07657; COG: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; Psort location: Cytoplasmic, score: 9.65.
       0.495
EDR47619.1
Hypothetical protein; COG: NOG12663 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
  
     0.482
EDR48198.1
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; KEGG: bca:BCE_2042 3.3e-53 sensor histidine kinase; COG: COG0642 Signal transduction histidine kinase; Psort location: CytoplasmicMembrane, score: 10.00.
       0.455
EDR48204.1
VanZ-like protein; COG: COG4767 Glycopeptide antibiotics resistance protein; Psort location: CytoplasmicMembrane, score: 9.99.
       0.434
Your Current Organism:
Dorea formicigenerans
NCBI taxonomy Id: 411461
Other names: D. formicigenerans ATCC 27755, Dorea formicigenerans ATCC 27755
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.