rpoD protein (Dorea formicigenerans) - STRING interaction network

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rpoD

RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. (382 aa)

Predicted Functional Partners:

rpoA

0.925

rpoB

0.924

rpoC

0.918

dnaG

0.903

rpoZ

0.841

EDR48620.1

0.838

whiA

0.774

EDR47970.1

0.768

EDR48435.1

0.759

EDR45608.1

0.759

Your Current Organism:

Dorea formicigenerans

NCBI taxonomy Id: 411461
Other names: D. formicigenerans ATCC 27755, Dorea formicigenerans ATCC 27755

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EDR45608.1	rpoA	DORFOR_02209	DORFOR_01330	Cyclic nucleotide-binding domain protein; KEGG: cfa:487827 0.00051 LOC487827; similar to protein kinase, cGMP-dependent, type II K07376; COG: COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases; Psort location: CytoplasmicMembrane, score: 9.75.	DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.799
EDR45608.1	rpoB	DORFOR_02209	DORFOR_00127	Cyclic nucleotide-binding domain protein; KEGG: cfa:487827 0.00051 LOC487827; similar to protein kinase, cGMP-dependent, type II K07376; COG: COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases; Psort location: CytoplasmicMembrane, score: 9.75.	DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.816
EDR45608.1	rpoC	DORFOR_02209	DORFOR_00128	Cyclic nucleotide-binding domain protein; KEGG: cfa:487827 0.00051 LOC487827; similar to protein kinase, cGMP-dependent, type II K07376; COG: COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases; Psort location: CytoplasmicMembrane, score: 9.75.	DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.812
EDR45608.1	rpoD	DORFOR_02209	DORFOR_00628	Cyclic nucleotide-binding domain protein; KEGG: cfa:487827 0.00051 LOC487827; similar to protein kinase, cGMP-dependent, type II K07376; COG: COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases; Psort location: CytoplasmicMembrane, score: 9.75.	RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.	0.759
EDR45608.1	rpoZ	DORFOR_02209	DORFOR_00580	Cyclic nucleotide-binding domain protein; KEGG: cfa:487827 0.00051 LOC487827; similar to protein kinase, cGMP-dependent, type II K07376; COG: COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases; Psort location: CytoplasmicMembrane, score: 9.75.	DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.	0.786
EDR47970.1	dnaG	DORFOR_00627	DORFOR_00629	Hypothetical protein; COG: COG2384 Predicted SAM-dependent methyltransferase; Psort location: Cytoplasmic, score: 8.87.	DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.	0.762
EDR47970.1	rpoD	DORFOR_00627	DORFOR_00628	Hypothetical protein; COG: COG2384 Predicted SAM-dependent methyltransferase; Psort location: Cytoplasmic, score: 8.87.	RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.	0.768
EDR47970.1	whiA	DORFOR_00627	DORFOR_01107	Hypothetical protein; COG: COG2384 Predicted SAM-dependent methyltransferase; Psort location: Cytoplasmic, score: 8.87.	Hypothetical protein; Involved in cell division and chromosome segregation.	0.663
EDR48435.1	rpoA	DORFOR_00177	DORFOR_01330	Cyclic nucleotide-binding domain protein; KEGG: eci:UTI89_C3860 0.0088 crp; CRP-cAMP transcriptional dual regulator K00924; COG: COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases; Psort location: Cytoplasmic, score: 8.87.	DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.799
EDR48435.1	rpoB	DORFOR_00177	DORFOR_00127	Cyclic nucleotide-binding domain protein; KEGG: eci:UTI89_C3860 0.0088 crp; CRP-cAMP transcriptional dual regulator K00924; COG: COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases; Psort location: Cytoplasmic, score: 8.87.	DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.816
EDR48435.1	rpoC	DORFOR_00177	DORFOR_00128	Cyclic nucleotide-binding domain protein; KEGG: eci:UTI89_C3860 0.0088 crp; CRP-cAMP transcriptional dual regulator K00924; COG: COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases; Psort location: Cytoplasmic, score: 8.87.	DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.812
EDR48435.1	rpoD	DORFOR_00177	DORFOR_00628	Cyclic nucleotide-binding domain protein; KEGG: eci:UTI89_C3860 0.0088 crp; CRP-cAMP transcriptional dual regulator K00924; COG: COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases; Psort location: Cytoplasmic, score: 8.87.	RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.	0.759
EDR48435.1	rpoZ	DORFOR_00177	DORFOR_00580	Cyclic nucleotide-binding domain protein; KEGG: eci:UTI89_C3860 0.0088 crp; CRP-cAMP transcriptional dual regulator K00924; COG: COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases; Psort location: Cytoplasmic, score: 8.87.	DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.	0.786
EDR48620.1	rpoD	DORFOR_00004	DORFOR_00628	Transcriptional regulator, AraC family; KEGG: bce:BC3740 8.0e-11 ADA regulatory protein K00567; COG: COG2207 AraC-type DNA-binding domain-containing proteins; Psort location: Cytoplasmic, score: 9.65.	RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.	0.838
dnaG	EDR47970.1	DORFOR_00629	DORFOR_00627	DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.	Hypothetical protein; COG: COG2384 Predicted SAM-dependent methyltransferase; Psort location: Cytoplasmic, score: 8.87.	0.762
dnaG	rpoB	DORFOR_00629	DORFOR_00127	DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.	DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.415
dnaG	rpoD	DORFOR_00629	DORFOR_00628	DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.	RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.	0.903
rpoA	EDR45608.1	DORFOR_01330	DORFOR_02209	DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Cyclic nucleotide-binding domain protein; KEGG: cfa:487827 0.00051 LOC487827; similar to protein kinase, cGMP-dependent, type II K07376; COG: COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases; Psort location: CytoplasmicMembrane, score: 9.75.	0.799
rpoA	EDR48435.1	DORFOR_01330	DORFOR_00177	DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Cyclic nucleotide-binding domain protein; KEGG: eci:UTI89_C3860 0.0088 crp; CRP-cAMP transcriptional dual regulator K00924; COG: COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases; Psort location: Cytoplasmic, score: 8.87.	0.799
rpoA	rpoB	DORFOR_01330	DORFOR_00127	DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999

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