STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDR47979.1Hypothetical protein; Psort location: Cytoplasmic, score: 8.87. (180 aa)    
Predicted Functional Partners:
EDR47980.1
KEGG: ter:Tery_5016 4.9e-91 glycogen debranching enzyme GlgX K02438; COG: COG1523 Type II secretory pathway, pullulanase PulA and related glycosidases; Psort location: Cytoplasmic, score: 8.87; Belongs to the glycosyl hydrolase 13 family.
       0.820
EDR47981.1
Sugar-binding domain protein; KEGG: msm:MSMEG_3095 1.0e-28 D-ribose-binding periplasmic protein; COG: COG1879 ABC-type sugar transport system, periplasmic component.
       0.729
EDR47978.1
ImpB/MucB/SamB family protein; KEGG: btl:BALH_p0040 6.9e-37 uvrX; DNA-damage repair protein (DNA polymerase IV) K00961; COG: COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair; Psort location: Cytoplasmic, score: 8.87.
       0.671
EDR47977.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.666
EDR47982.1
Hypothetical protein; KEGG: cal:orf19.6369 0.0066 RIO2; RIO-like serine/threonine protein kinase K07179; COG: COG3906 Uncharacterized protein conserved in bacteria; Psort location: Cytoplasmic, score: 8.87.
 
     0.596
EDR45487.1
Putative TIGR03943 family protein; COG: COG3689 Predicted membrane protein; Psort location: Cytoplasmic, score: 8.87.
  
     0.515
EDR45488.1
CobW/P47K family protein; KEGG: reh:H16_A0195 2.5e-39 putative GTPase (G3E family); COG: COG0523 Putative GTPases (G3E family); Psort location: Cytoplasmic, score: 8.87.
  
     0.419
Your Current Organism:
Dorea formicigenerans
NCBI taxonomy Id: 411461
Other names: D. formicigenerans ATCC 27755, Dorea formicigenerans ATCC 27755
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