STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDR47982.1Hypothetical protein; KEGG: cal:orf19.6369 0.0066 RIO2; RIO-like serine/threonine protein kinase K07179; COG: COG3906 Uncharacterized protein conserved in bacteria; Psort location: Cytoplasmic, score: 8.87. (98 aa)    
Predicted Functional Partners:
EDR47839.1
RNAse H domain protein, YqgF family; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family.
  
    0.753
EDR47838.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
  
     0.734
EDR47068.1
LysM domain protein; KEGG: lmf:LMOf2365_2670 3.9e-05 autolysin K01446; Psort location: Cytoplasmic, score: 8.87.
  
     0.714
EDR47799.1
Hypothetical protein.
  
     0.693
EDR46207.1
Hypothetical protein; KEGG: fnu:FN2033 9.3e-10 guanylate kinase K00942; COG: COG0194 Guanylate kinase; Psort location: Cytoplasmic, score: 8.87.
  
     0.689
EDR46311.1
Hypothetical protein.
  
     0.680
EDR48461.1
Small acid-soluble spore protein K family; Psort location: CytoplasmicMembrane, score: 9.99.
  
     0.667
EDR47432.1
Tetratricopeptide repeat protein; COG: COG1729 Uncharacterized protein conserved in bacteria.
  
     0.660
EDR46189.1
Hypothetical protein; KEGG: pma:Pro0860 5.6e-05 pulO; prepilin peptidase K02236; Psort location: CytoplasmicMembrane, score: 9.99.
  
     0.657
EDR47509.1
Hypothetical protein; KEGG: ljo:LJ1840 0.0021 cell wall-associated serine proteinase K01361; Psort location: Cytoplasmic, score: 8.87.
  
     0.653
Your Current Organism:
Dorea formicigenerans
NCBI taxonomy Id: 411461
Other names: D. formicigenerans ATCC 27755, Dorea formicigenerans ATCC 27755
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.