STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDR47988.1Hypothetical protein. (280 aa)    
Predicted Functional Partners:
plsX
Fatty acid/phospholipid synthesis protein PlsX; KEGG: tde:TDE0239 2.2e-104 grdD; glycine reductase complex protein GrdD; COG: COG0416 Fatty acid/phospholipid biosynthesis enzyme; Psort location: Cytoplasmic, score: 8.87.
       0.454
grdC
Glycine reductase complex component C, beta subunit; KEGG: tte:TTE1875 1.7e-159 fabH4; 3-oxoacyl-(acyl-carrier-protein) synthase III; COG: NOG06474 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
       0.446
EDR47986.1
Hypothetical protein; COG: COG3610 Uncharacterized conserved protein; Psort location: CytoplasmicMembrane, score: 9.99.
       0.441
EDR47987.1
Acetyltransferase, GNAT family; KEGG: lac:LBA1005 6.2e-23 putative acetyltransferase K00680; COG: COG0454 Histone acetyltransferase HPA2 and related acetyltransferases; Psort location: CytoplasmicMembrane, score: 9.99.
       0.432
Your Current Organism:
Dorea formicigenerans
NCBI taxonomy Id: 411461
Other names: D. formicigenerans ATCC 27755, Dorea formicigenerans ATCC 27755
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