Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EDR48011.1Efflux ABC transporter, permease protein; COG: COG0577 ABC-type antimicrobial peptide transport system, permease component; Psort location: CytoplasmicMembrane, score: 9.99. (664 aa)    
Predicted Functional Partners:
EDR48012.1
Putative bacteriocin export ABC transporter, lactococcin 972 group; KEGG: lwe:lwe2133 3.2e-64 ABC transporter, ATP-binding protein K06020; COG: COG1136 ABC-type antimicrobial peptide transport system, ATPase component; Psort location: CytoplasmicMembrane, score: 9.49.
 
 
 0.991
EDR48013.1
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; KEGG: stl:stu1335 3.8e-52 hk07; sensor histidine kinase (homolog to HK01Spn & Sth); COG: COG0642 Signal transduction histidine kinase; Psort location: CytoplasmicMembrane, score: 10.00.
 
 
 
 0.982
EDR48014.1
Response regulator receiver domain protein; KEGG: ava:Ava_1878 8.7e-30 two component transcriptional regulator, winged helix family K07659; COG: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; Psort location: Cytoplasmic, score: 9.98.
 
     0.871
EDR46136.1
Hypothetical protein; COG: NOG08579 non supervised orthologous group.
  
 
 0.818
EDR46470.1
Hypothetical protein; COG: NOG08579 non supervised orthologous group.
  
 
 0.818
EDR48010.1
Transposase, IS4 family; COG: COG3385 FOG: Transposase and inactivated derivatives; Psort location: Cytoplasmic, score: 8.87.
       0.440
Your Current Organism:
Dorea formicigenerans
NCBI taxonomy Id: 411461
Other names: D. formicigenerans ATCC 27755, Dorea formicigenerans ATCC 27755
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