STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDR48020.1Putative peptidoglycan binding domain protein; KEGG: cac:CAC0554 0.0056 lyc; autolytic lysozime (1,4-beta-N-acetylmuramidase), family 25 of glycosyl hydrolases; peptodoglycan-binding domain K01185; COG: NOG36567 non supervised orthologous group. (419 aa)    
Predicted Functional Partners:
EDR47573.1
KEGG: bsu:BG10825 9.7e-31 cwlC; N-acetylmuramoyl-L-alanine amidase, peptidoglycan hydrolase, LytC amidase family K01448; COG: COG0860 N-acetylmuramoyl-L-alanine amidase; Psort location: Cytoplasmic, score: 8.87.
 
  
 0.826
EDR48390.1
Putative phage head-tail adaptor; KEGG: cpf:CPF_2369 4.4e-67 subtilase family protein; COG: COG1404 Subtilisin-like serine proteases.
    0.818
EDR46846.1
Peptidase, S8/S53 family; KEGG: cpf:CPF_2369 2.9e-54 subtilase family protein; COG: COG1404 Subtilisin-like serine proteases; Psort location: Cytoplasmic, score: 8.87.
  
 0.814
spoIIP
Stage II sporulation protein P (SpoIIP); COG: NOG13213 non supervised orthologous group.
  
   
 0.689
EDR47784.1
Hypothetical protein.
  
     0.669
EDR47258.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
  
     0.652
EDR48048.1
COG: COG0629 Single-stranded DNA-binding protein; Psort location: Cytoplasmic, score: 8.87.
  
     0.625
EDR46590.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
  
     0.625
EDR46591.1
LysM domain protein; COG: COG1388 FOG: LysM repeat; Psort location: Cytoplasmic, score: 8.87.
 
   
 0.615
EDR48526.1
Hypothetical protein; COG: NOG17862 non supervised orthologous group.
  
     0.585
Your Current Organism:
Dorea formicigenerans
NCBI taxonomy Id: 411461
Other names: D. formicigenerans ATCC 27755, Dorea formicigenerans ATCC 27755
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.