STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDR48063.1Hypothetical protein; Psort location: Cytoplasmic, score: 8.87. (265 aa)    
Predicted Functional Partners:
EDR48064.1
Hypothetical protein; KEGG: cef:CE2033 0.0026 putative lipoprotein signal peptidase K03101; Psort location: CytoplasmicMembrane, score: 9.26.
       0.648
EDR48065.1
Hypothetical protein.
       0.648
EDR48066.1
Hypothetical protein; Psort location: Extracellular, score: 8.82.
       0.446
EDR48067.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.446
EDR48068.1
Hypothetical protein; KEGG: tfu:Tfu_1078 0.0061 lumazine-binding protein K00793; Psort location: Cytoplasmic, score: 8.87.
       0.446
EDR48069.1
Hypothetical protein; KEGG: bsu:BG10233 8.2e-15 bpr, bpf; bacillopeptidase F; COG: COG4412 Uncharacterized protein conserved in bacteria; Psort location: Extracellular, score: 9.55.
       0.440
EDR48070.1
Hypothetical protein.
       0.430
EDR48071.1
Hypothetical protein.
       0.430
EDR48072.1
Hypothetical protein.
       0.430
Your Current Organism:
Dorea formicigenerans
NCBI taxonomy Id: 411461
Other names: D. formicigenerans ATCC 27755, Dorea formicigenerans ATCC 27755
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.