Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDR48081.1Hypothetical protein; Psort location: Cytoplasmic, score: 8.87. (141 aa)    
Predicted Functional Partners:
EDR48080.1
Bacteriophage Gp15 protein; COG: NOG24969 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
       0.786
EDR48079.1
Hypothetical protein.
       0.773
EDR48082.1
Hypothetical protein.
       0.746
EDR48083.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.741
EDR48085.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.731
EDR48087.1
Putative phage capsid family; COG: NOG20168 non supervised orthologous group.
       0.714
EDR48086.1
Hypothetical protein.
       0.713
EDR48084.1
Hypothetical protein.
       0.710
EDR48088.1
Hypothetical protein.
       0.685
EDR48078.1
Hypothetical protein; KEGG: ret:RHE_PF00265 7.2e-05 probable two-component sensor histidine kinase/response regulator hybrid protein; COG: COG5412 Phage-related protein; Psort location: CytoplasmicMembrane, score: 9.99.
       0.648
Your Current Organism:
Dorea formicigenerans
NCBI taxonomy Id: 411461
Other names: D. formicigenerans ATCC 27755, Dorea formicigenerans ATCC 27755
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