Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDR48089.1Hypothetical protein. (95 aa)    
Predicted Functional Partners:
rpmA
COG: COG0211 Ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.
  
 
 0.956
EDR48093.1
Phage terminase, large subunit, PBSX family; COG: COG1783 Phage terminase large subunit; Psort location: Cytoplasmic, score: 8.87.
 
     0.871
EDR48092.1
Phage minor capsid protein; COG: NOG25118 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
 
     0.869
EDR48094.1
Hypothetical protein; COG: COG5484 Uncharacterized conserved protein; Psort location: Cytoplasmic, score: 8.87.
 
     0.854
EDR48087.1
Putative phage capsid family; COG: NOG20168 non supervised orthologous group.
 
     0.853
rplU
Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
  
  
 0.832
rplJ
Ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.
   
    0.778
rpsB
COG: COG0052 Ribosomal protein S2; Psort location: Cytoplasmic, score: 8.87; Belongs to the universal ribosomal protein uS2 family.
   
  
 0.773
EDR48091.1
Hypothetical protein; COG: NOG17345 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
 
     0.749
EDR48090.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.605
Your Current Organism:
Dorea formicigenerans
NCBI taxonomy Id: 411461
Other names: D. formicigenerans ATCC 27755, Dorea formicigenerans ATCC 27755
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