STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EDR47713.1Putative DNA metabolism protein; KEGG: ccr:CC2333 3.5e-06 phage SPO1 DNA polymerase-related protein K02334; COG: COG1573 Uracil-DNA glycosylase; Psort location: Cytoplasmic, score: 8.87. (257 aa)    
Predicted Functional Partners:
EDR47714.1
Putative DNA modification/repair radical SAM protein; COG: COG4277 Predicted DNA-binding protein with the Helix-hairpin-helix motif; Psort location: Cytoplasmic, score: 8.87.
 
    0.958
EDR47712.1
DEAD2 domain protein; KEGG: mja:MJ0942 6.8e-25 dinG; ATP-dependent DNA helicase DinG, putative K01529; COG: COG1199 Rad3-related DNA helicases; Psort location: Cytoplasmic, score: 8.87.
 
     0.657
yeaZ
Universal bacterial protein YeaZ; KEGG: ctc:CTC02444 5.0e-43 O-sialoglycoprotein endopeptidase K01409; COG: COG1214 Inactive homolog of metal-dependent proteases, putative molecular chaperone; Psort location: Cytoplasmic, score: 8.87.
  
    0.536
EDR47140.1
KEGG: tte:TTE1208 1.4e-148 pycA; Pyruvate carboxylase, C-terminal domain/subunit K01960; COG: COG5016 Pyruvate/oxaloacetate carboxyltransferase; Psort location: Cytoplasmic, score: 8.87.
   
    0.509
EDR47715.1
Nucleotide-binding protein; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family.
       0.443
Your Current Organism:
Dorea formicigenerans
NCBI taxonomy Id: 411461
Other names: D. formicigenerans ATCC 27755, Dorea formicigenerans ATCC 27755
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