STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDR47731.1Polysaccharide deacetylase; KEGG: spd:SPD_1309 1.7e-35 pgdA; peptidoglycan GlcNAc deacetylase K01463; COG: COG0726 Predicted xylanase/chitin deacetylase; Psort location: Cytoplasmic, score: 9.98. (256 aa)    
Predicted Functional Partners:
EDR47730.1
Recombination factor protein RarA; KEGG: ava:Ava_B0112 4.1e-119 ATPase K00961:K07478; COG: COG2256 ATPase related to the helicase subunit of the Holliday junction resolvase; Psort location: Cytoplasmic, score: 8.87.
  
    0.656
EDR47732.1
Flavin reductase-like protein; KEGG: bmf:BAB1_1090 4.5e-10 nitrilotriacetate monooxygenase component B K00492; COG: COG1853 Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family.
       0.588
EDR47733.1
DRTGG domain protein; KEGG: ctc:CTC01649 2.0e-126 putative manganese-dependent inorganic pyrophosphatase K01507; COG: COG1227 Inorganic pyrophosphatase/exopolyphosphatase; Psort location: Cytoplasmic, score: 8.87.
       0.565
EDR47729.1
Hypothetical protein.
       0.439
EDR47856.1
Glycosyltransferase, group 2 family protein; KEGG: gbe:GbCGDNIH1_2152 1.6e-68 glycosyltransferase K00754; COG: COG0463 Glycosyltransferases involved in cell wall biogenesis; Psort location: Cytoplasmic, score: 8.87.
 
  
 0.439
Your Current Organism:
Dorea formicigenerans
NCBI taxonomy Id: 411461
Other names: D. formicigenerans ATCC 27755, Dorea formicigenerans ATCC 27755
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.