STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDR47738.1Hypothetical protein; Psort location: Cytoplasmic, score: 8.87. (277 aa)    
Predicted Functional Partners:
EDR47087.1
NlpC/P60 family protein; KEGG: bce:BC5234 2.5e-20 N-acetylmuramoyl-L-alanine amidase K01446; COG: COG0791 Cell wall-associated hydrolases (invasion-associated proteins); Psort location: Extracellular, score: 9.73.
  
     0.601
EDR47651.1
COG: COG4824 Phage-related holin (Lysis protein); Psort location: CytoplasmicMembrane, score: 9.99.
  
     0.571
EDR47518.1
Hypothetical protein; KEGG: rno:309804 1.3e-25 Cdc2l6_predicted; cell division cycle 2-like 6 (CDK8-like) (predicted) K02208; COG: COG1340 Uncharacterized archaeal coiled-coil protein; Psort location: Cytoplasmic, score: 8.87.
  
     0.551
EDR45355.1
Hypothetical protein; KEGG: spj:MGAS2096_Spy0193 1.2e-11 S-layer protein.
  
     0.532
EDR46848.1
Phage/plasmid primase, P4 family domain protein; KEGG: hwa:HQ4022A 3.5e-14 putative P4-specific DNA primase; COG: COG3378 Predicted ATPase; Psort location: Cytoplasmic, score: 8.87.
  
     0.506
EDR47209.1
Hypothetical protein.
  
     0.468
hslO
Chaperonin HslO; Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress.
       0.466
EDR47737.1
Methyltransferase domain protein; KEGG: bce:BC4326 3.4e-44 methyltransferase K00599; COG: COG0500 SAM-dependent methyltransferases; Psort location: Cytoplasmic, score: 8.87.
       0.466
EDR46598.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
  
     0.464
EDR46856.1
Relaxase/mobilization nuclease domain protein; KEGG: xtr:407915 0.0022 ppig; peptidyl-prolyl isomerase G (cyclophilin G) K01802; COG: COG3843 Type IV secretory pathway, VirD2 components (relaxase); Psort location: Cytoplasmic, score: 8.87.
  
     0.456
Your Current Organism:
Dorea formicigenerans
NCBI taxonomy Id: 411461
Other names: D. formicigenerans ATCC 27755, Dorea formicigenerans ATCC 27755
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