STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDR47757.1Transcriptional regulator, MarR family; COG: NOG16844 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87. (143 aa)    
Predicted Functional Partners:
EDR47758.1
MATE efflux family protein; COG: COG0534 Na+-driven multidrug efflux pump; Psort location: CytoplasmicMembrane, score: 9.99.
  
    0.616
EDR47759.1
KEGG: chy:CHY_1912 3.5e-129 hom; homoserine dehydrogenase K00003; COG: COG0460 Homoserine dehydrogenase; Psort location: Cytoplasmic, score: 8.87.
       0.613
EDR47760.1
CorA-like protein; COG: COG0598 Mg2+ and Co2+ transporters; Psort location: Cytoplasmic, score: 8.87.
       0.578
EDR47756.1
Hypothetical protein; COG: NOG11752 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
       0.480
EDR45947.1
Hypothetical protein; KEGG: cpr:CPR_0968 7.0e-21 prtP; cell wall-associated serine proteinase, lactocepin precursor K01361; COG: NOG17334 non supervised orthologous group.
  
     0.443
EDR47755.1
Flavodoxin; KEGG: syn:sll0219 3.9e-08 potential FMN-protein; COG: COG0716 Flavodoxins; Psort location: Cytoplasmic, score: 8.87.
       0.409
Your Current Organism:
Dorea formicigenerans
NCBI taxonomy Id: 411461
Other names: D. formicigenerans ATCC 27755, Dorea formicigenerans ATCC 27755
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