STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDR47780.1YqeY-like protein; KEGG: mmp:MMP1265 2.4e-07 glutamyl-tRNA(Gln) amidotransferase subunit E K03330; COG: COG1610 Uncharacterized conserved protein; Psort location: Cytoplasmic, score: 8.87. (148 aa)    
Predicted Functional Partners:
rpsU
COG: COG0828 Ribosomal protein S21; Psort location: Cytoplasmic, score: 8.87; Belongs to the bacterial ribosomal protein bS21 family.
  
  
 0.888
rpsO
Ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.
   
    0.535
rpmE
Ribosomal protein L31; Binds the 23S rRNA.
   
    0.507
glgD
Glucose-1-phosphate adenylyltransferase, GlgD subunit; KEGG: bha:BH1086 1.3e-58 glgD; required for glycogen biosynthesis K00975; COG: COG0448 ADP-glucose pyrophosphorylase; Psort location: Cytoplasmic, score: 8.87.
       0.465
glgC
Glucose-1-phosphate adenylyltransferase; Involved in the biosynthesis of ADP-glucose, a building block required for the elongation reactions to produce glycogen. Catalyzes the reaction between ATP and alpha-D-glucose 1-phosphate (G1P) to produce pyrophosphate and ADP-Glc; Belongs to the bacterial/plant glucose-1-phosphate adenylyltransferase family.
       0.465
EDR47777.1
Radical SAM domain protein; KEGG: cac:CAC3242 2.7e-90 uncharacterized Fe-S protein, PflX (pyruvate formate lyase activating protein) homolog K04070; COG: COG1313 Uncharacterized Fe-S protein PflX, homolog of pyruvate formate lyase activating proteins; Psort location: Cytoplasmic, score: 8.87.
       0.459
EDR47776.1
Hypothetical protein; KEGG: reh:H16_A1626 1.3e-06 rpoD1; DNA-directed RNA polymerase sigma subunit (RpoD) K00960; COG: COG0568 DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32); Psort location: Cytoplasmic, score: 9.98.
  
    0.401
Your Current Organism:
Dorea formicigenerans
NCBI taxonomy Id: 411461
Other names: D. formicigenerans ATCC 27755, Dorea formicigenerans ATCC 27755
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