STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDR47851.1Cell envelope-like function transcriptional attenuator common domain protein; COG: COG1316 Transcriptional regulator. (382 aa)    
Predicted Functional Partners:
EDR47850.1
Glycosyltransferase, group 2 family protein; KEGG: stm:STM2085 7.9e-52 rfbN; LPS side chain defect: rhamnosyl transferase K00754; COG: COG0463 Glycosyltransferases involved in cell wall biogenesis; Psort location: Cytoplasmic, score: 8.87.
 
     0.830
EDR47852.1
KEGG: tcx:Tcr_1675 1.1e-72 undecaprenyl-phosphate galactosephosphotransferase K03606; COG: COG2148 Sugar transferases involved in lipopolysaccharide synthesis; Psort location: CytoplasmicMembrane, score: 10.00.
 
   
 0.788
EDR47856.1
Glycosyltransferase, group 2 family protein; KEGG: gbe:GbCGDNIH1_2152 1.6e-68 glycosyltransferase K00754; COG: COG0463 Glycosyltransferases involved in cell wall biogenesis; Psort location: Cytoplasmic, score: 8.87.
 
   
 0.578
EDR47849.1
Cell envelope-like function transcriptional attenuator common domain protein; KEGG: cal:orf19.4072 2.2e-17 HYR10; similar to cell surface flocculin K01186; COG: COG1316 Transcriptional regulator; Psort location: Cellwall, score: 9.17.
 
    
0.573
EDR47855.1
Glycosyltransferase, group 2 family protein; KEGG: gbe:GbCGDNIH1_2152 1.4e-51 glycosyltransferase K00754; COG: COG0463 Glycosyltransferases involved in cell wall biogenesis; Psort location: Cytoplasmic, score: 8.87.
     
 0.485
sepF
Hypothetical protein; Cell division protein that is part of the divisome complex and is recruited early to the Z-ring. Probably stimulates Z-ring formation, perhaps through the cross-linking of FtsZ protofilaments. Its function overlaps with FtsA.
  
     0.482
EDR47853.1
Glycosyltransferase, group 2 family protein; KEGG: afu:AF0321 2.3e-17 glycosyl transferase K00754; COG: COG1216 Predicted glycosyltransferases; Psort location: Cytoplasmic, score: 8.87.
       0.475
EDR47854.1
Glycosyltransferase, group 1 family protein; KEGG: rba:RB3591 2.2e-12 putative transferase; COG: COG0438 Glycosyltransferase; Psort location: Cytoplasmic, score: 8.87.
       0.457
rfbC
dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.
     
 0.443
EDR47857.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
     
 0.441
Your Current Organism:
Dorea formicigenerans
NCBI taxonomy Id: 411461
Other names: D. formicigenerans ATCC 27755, Dorea formicigenerans ATCC 27755
Server load: low (10%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.