STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDR47885.1ErfK/YbiS/YcfS/YnhG; KEGG: spr:spr0867 8.4e-30 lytB; endo-beta-N-acetylglucosaminidase K01227; COG: COG5263 FOG: Glucan-binding domain (YG repeat); Psort location: Extracellular, score: 9.55. (693 aa)    
Predicted Functional Partners:
EDR47887.1
Cholinephosphate cytidylyltransferase/choline kinase; KEGG: fnu:FN1237 1.1e-40 choline kinase K00866:K00968; COG: COG4750 CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes; Psort location: Cytoplasmic, score: 8.87.
 
    0.675
EDR47886.1
KEGG: fnu:FN1237 4.1e-64 choline kinase K00866:K00968; COG: COG0510 Predicted choline kinase involved in LPS biosynthesis; Psort location: Cytoplasmic, score: 8.87.
 
    0.661
EDR47888.1
Transporter, betaine/carnitine/choline family; KEGG: shn:Shewana3_2719 1.9e-42 choline/carnitine/betaine transporter K01718; COG: COG1292 Choline-glycine betaine transporter; Psort location: CytoplasmicMembrane, score: 10.00; Belongs to the BCCT transporter (TC 2.A.15) family.
 
     0.575
EDR47884.1
Glycosyltransferase, group 2 family protein; KEGG: lsl:LSL_0696 2.4e-34 rfaG; glycosyltransferase K00754; COG: COG0463 Glycosyltransferases involved in cell wall biogenesis; Psort location: Cytoplasmic, score: 8.87.
       0.565
EDR47573.1
KEGG: bsu:BG10825 9.7e-31 cwlC; N-acetylmuramoyl-L-alanine amidase, peptidoglycan hydrolase, LytC amidase family K01448; COG: COG0860 N-acetylmuramoyl-L-alanine amidase; Psort location: Cytoplasmic, score: 8.87.
   
 
 0.533
EDR47883.1
Glycosyltransferase, group 2 family protein; KEGG: bce:BC5267 8.2e-34 glycosyltransferase K00754; COG: COG0463 Glycosyltransferases involved in cell wall biogenesis; Psort location: Cytoplasmic, score: 8.87.
       0.491
EDR47339.1
Hypothetical protein; KEGG: ava:Ava_1700 1.3e-11 serine/threonine protein kinase K08884; COG: NOG22472 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
  
     0.407
Your Current Organism:
Dorea formicigenerans
NCBI taxonomy Id: 411461
Other names: D. formicigenerans ATCC 27755, Dorea formicigenerans ATCC 27755
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