STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDR47887.1Cholinephosphate cytidylyltransferase/choline kinase; KEGG: fnu:FN1237 1.1e-40 choline kinase K00866:K00968; COG: COG4750 CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes; Psort location: Cytoplasmic, score: 8.87. (299 aa)    
Predicted Functional Partners:
EDR47886.1
KEGG: fnu:FN1237 4.1e-64 choline kinase K00866:K00968; COG: COG0510 Predicted choline kinase involved in LPS biosynthesis; Psort location: Cytoplasmic, score: 8.87.
 
   
0.857
EDR47888.1
Transporter, betaine/carnitine/choline family; KEGG: shn:Shewana3_2719 1.9e-42 choline/carnitine/betaine transporter K01718; COG: COG1292 Choline-glycine betaine transporter; Psort location: CytoplasmicMembrane, score: 10.00; Belongs to the BCCT transporter (TC 2.A.15) family.
 
     0.852
folD
Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain protein; Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10- methenyltetrahydrofolate to 10-formyltetrahydrofolate.
  
 
  0.676
EDR47885.1
ErfK/YbiS/YcfS/YnhG; KEGG: spr:spr0867 8.4e-30 lytB; endo-beta-N-acetylglucosaminidase K01227; COG: COG5263 FOG: Glucan-binding domain (YG repeat); Psort location: Extracellular, score: 9.55.
 
    0.675
Your Current Organism:
Dorea formicigenerans
NCBI taxonomy Id: 411461
Other names: D. formicigenerans ATCC 27755, Dorea formicigenerans ATCC 27755
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