STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDR47452.1Transcriptional regulator, GntR family; KEGG: msm:MSMEG_3400 1.3e-12 glutamyl-tRNA(Gln) amidotransferase subunit A K01957; COG: COG1802 Transcriptional regulators; Psort location: Cytoplasmic, score: 8.87. (225 aa)    
Predicted Functional Partners:
EDR47450.1
Hypothetical protein; COG: COG5505 Predicted integral membrane protein; Psort location: CytoplasmicMembrane, score: 9.99.
 
     0.801
EDR45773.1
FCD domain protein; COG: COG2186 Transcriptional regulators; Psort location: Cytoplasmic, score: 8.87.
  
  
 0.792
EDR47451.1
Hypothetical protein.
       0.773
EDR47453.1
Aminopeptidase I zinc metalloprotease (M18); KEGG: cac:CAC1091 2.5e-151 aspartyl aminopeptidase K01269; COG: COG1362 Aspartyl aminopeptidase; Psort location: Cytoplasmic, score: 8.87.
       0.664
EDR47454.1
Hypothetical protein; COG: COG1284 Uncharacterized conserved protein; Psort location: CytoplasmicMembrane, score: 9.99.
       0.546
sdaAB
L-serine dehydratase, iron-sulfur-dependent, beta subunit; KEGG: tte:TTE1008 4.5e-49 sdaA; L-serine deaminase K01752; COG: COG1760 L-serine deaminase; Psort location: Cytoplasmic, score: 8.87; Belongs to the iron-sulfur dependent L-serine dehydratase family.
  
    0.533
sdaAA
KEGG: cno:NT01CX_1254 4.8e-61 sdaAA; L-serine dehydratase, iron-sulfur-dependent, alpha subunit K01752; COG: COG1760 L-serine deaminase; Psort location: Cytoplasmic, score: 8.87.
  
    0.533
EDR47449.1
M42 glutamyl aminopeptidase; KEGG: bce:BC0901 1.0e-74 deblocking aminopeptidase K01269; COG: COG1363 Cellulase M and related proteins.
       0.512
EDR47158.1
Transcriptional regulator, GntR family; KEGG: reh:H16_B1289 1.0e-08 phnF; regulator of phosphonate operon, GntR-family; COG: COG2186 Transcriptional regulators; Psort location: Cytoplasmic, score: 8.87.
  
  
 0.512
EDR46340.1
Transcriptional regulator, IclR family, C-terminal domain protein; COG: COG1414 Transcriptional regulator; Psort location: Cytoplasmic, score: 8.87.
  
    0.499
Your Current Organism:
Dorea formicigenerans
NCBI taxonomy Id: 411461
Other names: D. formicigenerans ATCC 27755, Dorea formicigenerans ATCC 27755
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