Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDR47459.1COG: COG3209 Rhs family protein; Psort location: Cellwall, score: 9.17. (148 aa)    
Predicted Functional Partners:
EDR47458.1
Hypothetical protein; COG: NOG25267 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
 
     0.709
EDR47460.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.547
EDR47461.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.547
EDR45661.1
DNA-binding helix-turn-helix protein; KEGG: blo:BL0712 5.4e-06 aspartate aminotransferase K00812; COG: COG1396 Predicted transcriptional regulators; Psort location: Cytoplasmic, score: 8.87.
  
     0.537
EDR46519.1
DNA-binding helix-turn-helix protein; KEGG: blo:BL0712 1.1e-05 aspartate aminotransferase K00812; COG: COG1396 Predicted transcriptional regulators; Psort location: Cytoplasmic, score: 8.87.
  
     0.529
EDR46252.1
E1-E2 ATPase; KEGG: lsl:LSL_1210 1.8e-260 cation-transporting ATPase; COG: COG0474 Cation transport ATPase; Psort location: CytoplasmicMembrane, score: 10.00.
  
    0.505
trxA
Thioredoxin; KEGG: mbo:Mb3945 4.1e-23 trxC; thioredoxin TrxC (TRX) (MPT46) K03671; COG: COG0526 Thiol-disulfide isomerase and thioredoxins; Psort location: Cytoplasmic, score: 9.65; Belongs to the thioredoxin family.
    
   0.484
EDR48436.1
KEGG: ava:Ava_4761 3.2e-16 thioredoxin K03671; COG: COG0526 Thiol-disulfide isomerase and thioredoxins; Psort location: Cytoplasmic, score: 9.98; Belongs to the thioredoxin family.
    
   0.484
trxA-2
Thioredoxin; KEGG: eci:UTI89_C4335 2.1e-21 trxA; thioredoxin 1 K03671; COG: COG0526 Thiol-disulfide isomerase and thioredoxins; Psort location: Cytoplasmic, score: 9.98; Belongs to the thioredoxin family.
    
   0.484
EDR47993.1
Thioredoxin; KEGG: eci:UTI89_C4335 2.2e-10 trxA; thioredoxin 1 K03671; COG: COG0526 Thiol-disulfide isomerase and thioredoxins; Psort location: Cytoplasmic, score: 8.87.
    
   0.484
Your Current Organism:
Dorea formicigenerans
NCBI taxonomy Id: 411461
Other names: D. formicigenerans ATCC 27755, Dorea formicigenerans ATCC 27755
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