STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDR47477.1Hypothetical protein; KEGG: tte:TTE0562 1.3e-18 baeS2; sensory transduction histidine kinases K07706; COG: COG2972 Predicted signal transduction protein with a C-terminal ATPase domain; Psort location: CytoplasmicMembrane, score: 9.97. (433 aa)    
Predicted Functional Partners:
EDR48220.1
Hypothetical protein; KEGG: tte:TTE0562 2.9e-07 baeS2; sensory transduction histidine kinases K07706; COG: COG2972 Predicted signal transduction protein with a C-terminal ATPase domain; Psort location: CytoplasmicMembrane, score: 9.99.
  
  
  0.757
EDR45647.1
Hypothetical protein; COG: NOG14070 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
  
 0.673
EDR46417.1
Hypothetical protein; COG: NOG14070 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
  
 0.673
EDR48218.1
Hypothetical protein; KEGG: abo:ABO_0442 8.9e-07 sensor histidine kinase; COG: COG0642 Signal transduction histidine kinase; Psort location: Cytoplasmic, score: 8.87.
     
 0.591
EDR48417.1
Hypothetical protein.
     
 0.579
EDR48301.1
Hypothetical protein; KEGG: tcx:Tcr_2180 1.1e-64 PAS/PAC sensor hybrid histidine kinase K07679; COG: COG0642 Signal transduction histidine kinase; Psort location: CytoplasmicMembrane, score: 10.00.
     
 0.559
EDR46822.1
Response regulator receiver domain protein; KEGG: chu:CHU_2895 4.1e-66 sensory box histidine kinase/response regulator; COG: COG2203 FOG: GAF domain; Psort location: Cytoplasmic, score: 9.36.
     
 0.559
EDR47476.1
Hypothetical protein.
       0.537
EDR47478.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.523
EDR47473.1
LytTr DNA-binding domain protein; KEGG: abo:ABO_2519 0.00011 response regulator; COG: COG3279 Response regulator of the LytR/AlgR family; Psort location: Cytoplasmic, score: 8.87.
 
 
 0.510
Your Current Organism:
Dorea formicigenerans
NCBI taxonomy Id: 411461
Other names: D. formicigenerans ATCC 27755, Dorea formicigenerans ATCC 27755
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