Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDR47527.1Hypothetical protein. (40 aa)    
Predicted Functional Partners:
EDR47525.1
Transcriptional regulator, AsnC family; KEGG: sat:SYN_02590 0.0017 anthranilate phosphoribosyltransferase K00766; COG: COG1522 Transcriptional regulators; Psort location: Cytoplasmic, score: 8.87.
       0.701
EDR47526.1
Aminotransferase, class I/II; KEGG: tte:TTE2440 4.1e-126 avtA4; PLP-dependent aminotransferases K00821; COG: COG0436 Aspartate/tyrosine/aromatic aminotransferase; Psort location: Cytoplasmic, score: 8.87.
       0.701
EDR47524.1
Hypothetical protein; KEGG: cch:Cag_0556 2.5e-07 hypE; hydrogenase expression/formation protein HypE K04655; COG: COG0309 Hydrogenase maturation factor; Psort location: Cytoplasmic, score: 8.87.
       0.620
EDR47528.1
Putative RNA methyltransferase, TrmH family, group 2; Could methylate the ribose at the nucleotide 34 wobble position in tRNA; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. TrmL subfamily.
       0.516
EDR47523.1
G5 domain protein; COG: COG2720 Uncharacterized vancomycin resistance protein.
       0.418
Your Current Organism:
Dorea formicigenerans
NCBI taxonomy Id: 411461
Other names: D. formicigenerans ATCC 27755, Dorea formicigenerans ATCC 27755
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