Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDR47537.1Hypothetical protein; Psort location: Cytoplasmic, score: 8.87. (129 aa)    
Predicted Functional Partners:
EDR47538.1
Hypothetical protein.
       0.773
EDR47024.1
Hypothetical protein.
  
     0.771
EDR46591.1
LysM domain protein; COG: COG1388 FOG: LysM repeat; Psort location: Cytoplasmic, score: 8.87.
  
    0.759
EDR48008.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
  
     0.756
EDR47773.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.99.
  
     0.755
EDR47209.1
Hypothetical protein.
  
     0.753
EDR48007.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
  
     0.749
EDR46590.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
  
     0.746
EDR47258.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
  
     0.740
EDR46203.1
Hypothetical protein; COG: KOG3704 Heparan sulfate D-glucosaminyl 3-O-sulfotransferase; Psort location: CytoplasmicMembrane, score: 7.63.
  
     0.737
Your Current Organism:
Dorea formicigenerans
NCBI taxonomy Id: 411461
Other names: D. formicigenerans ATCC 27755, Dorea formicigenerans ATCC 27755
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